| ENSP00000274242.proc.267443 | |
|---|---|
| View | UCSC Genome Browser |
| ID | ENSP00000274242.proc.267443 |
| Chromosome | 1 |
| Start Coordinate | 6816990 |
| Stop Coordinate | 6817247 |
| Strand | - |
| Parent Protein | ENSP00000274242 |
| Protein Sequence Start | 93 |
| Protein Sequence Stop | 97 |
| Parent Gene | ENSG00000145592 |
| Fraction | 0.89 |
| Number of Insertions | -- |
| Number of Deletions | -- |
| Number of Shifts | -- |
| Number of Stops | -- |
| Identity | 0.791 |
| PolyA | 3 |
| Disablements? | No |
| Exons | [[6816990, 6817247]] |
| Introns | [] |
| Pseudogene Class | Processed |
| Pseudogene Sequence | TTTGGAAAGTGTTGCAATAGGACACACACATTGTGCCACCGCTGTGGCGTGAAGGCCTACCACCTTCAGAAGTTGACCTGTGGCAAATGTGGCTACCCCGCCAAGTGCAGGAGGACGTATAACTGGAGTGCCAAGGCTAAAAGACAAAATGCCACCAGGACTGGCCGAACGAGGCACCTAAAAATTGTACACCACAGATT |
| Build | 36 |
|  |
Fragment Browser
Top
*(1144-1012)(3-136) Ev: 6.12692e-37 s: 133/134 r
* "h_6816119_6818118" (2000 bp) / "EX_02" (136 bp)
* score = 462 : bitscore = 141.16
* mutations per triplet 6, 5, 9 (2.23e-02) | ts : 15 tv : 5 | entropy : 5.09519
|1140 |1130 |1120 |1110 |1100 |1090 |1080 |1070
GAAGTGAG-ATGACCGTTTGGAAAGTGTTGCAATAGGACACACACATTGTGCCACCGCTGTGGCGTGAAGGCCTACCACC
||||.||: :|.|:|||||||||||:||:||||||:|||:|||||:|||||||:||||||||||.:.|||||||||||||
GAAGGGAACGTCATCGTTTGGAAAGCGTCGCAATAAGACGCACACGTTGTGCCGCCGCTGTGGCTCTAAGGCCTACCACC
|10 |20 |30 |40 |50 |60 |70 |80
|1060 |1050 |1040 |1030 |1020
TTCAGAAGTTGACCTGTGGCAAATGTGGCTACCCCGCCAAGTGCAGGAGGACGT
|||||||||:||||||||||||||||||||||||:||||||:|||:|||:|.||
TTCAGAAGTCGACCTGTGGCAAATGTGGCTACCCTGCCAAGCGCAAGAGAAAGT
|90 |100 |110 |120 |130
Top
*(1011-927)(1-85) Ev: 1.01092e-26 s: 85/85 r
* "h_6816119_6818118" (2000 bp) / "EX_03" (85 bp)
* score = 349 : bitscore = 107.22
* mutations per triplet 2, 3, 3 (8.54e-02) | ts : 8 tv : 0 | entropy : 5.02323
|1010 |1000 |990 |980 |970 |960 |950 |940
ATAACTGGAGTGCCAAGGCTAAAAGACAAAATGCCACCAGGACTGGCCGAACGAGGCACCTAAAAATTGTACACCACAGA
|||||||||||||||||||||||||||:||||:|||||:|:|||||:||||:|||||||||||||||||||:|||:||||
ATAACTGGAGTGCCAAGGCTAAAAGACGAAATACCACCGGAACTGGTCGAATGAGGCACCTAAAAATTGTATACCGCAGA
|10 |20 |30 |40 |50 |60 |70
|930
TTCAG
|||||
TTCAG
Top
*(956-897)(1-60) Ev: 9.04286e-18 s: 60/60 r
* "h_6816119_6818118" (2000 bp) / "EE_03" (60 bp)
* score = 250 : bitscore = 77.48
* mutations per triplet 1, 2, 2 (1.23e-01) | ts : 5 tv : 0 | entropy : 4.83421
|950 |940 |930 |920 |910 |900
GCACCTAAAAATTGTACACCACAGATTCAGGCATGGACTCCGTGAGGAAACAACACCTAA
||||||||||||||||:|||:||||||||||||||||:|||||||:|:||||||||||||
GCACCTAAAAATTGTATACCGCAGATTCAGGCATGGATTCCGTGAAGGAACAACACCTAA
|10 |20 |30 |40 |50
Top
*(926-857)(1-70) Ev: 2.07963e-17 s: 70/70 r
* "h_6816119_6818118" (2000 bp) / "EX_04" (70 bp)
* score = 246 : bitscore = 76.28
* mutations per triplet 4, 4, 3 (6.52e-02) | ts : 6 tv : 5 | entropy : 5.01906
|920 |910 |900 |890 |880 |870 |860
GCATGGACTCCGTGAGGAAACAACACCTAAACCAAAGAGGGCAGCTGTTGGAGCACTTTGATCAGCTTAA
|||||||:|||||||:|:|||||||||||||||.||||||||||||||||.||||:::.|.|||.|||||
GCATGGATTCCGTGAAGGAACAACACCTAAACCCAAGAGGGCAGCTGTTGCAGCATCCAGTTCATCTTAA
|10 |20 |30 |40 |50 |60
Top
*(1041-982)(1-60) Ev: 3.15374e-17 s: 60/60 r
* "h_6816119_6818118" (2000 bp) / "EE_02" (60 bp)
* score = 244 : bitscore = 75.68
* mutations per triplet 2, 1, 3 (8.23e-02) | ts : 5 tv : 1 | entropy : 4.70499
|1040 |1030 |1020 |1010 |1000 |990
GTGGCTACCCCGCCAAGTGCAGGAGGACGTATAACTGGAGTGCCAAGGCTAAAAGACAAA
||||||||||:||||||:|||:|||:|.|||||||||||||||||||||||||||||:||
GTGGCTACCCTGCCAAGCGCAAGAGAAAGTATAACTGGAGTGCCAAGGCTAAAAGACGAA
|10 |20 |30 |40 |50
Alignments by YASS| Associated Sets |
|---|
| Human Pseudogenes |