Yale Pseudogenes (Ensembl 50) :: ENSP00000274979.frag.267469

ENSP00000274979.frag.267469
ViewUCSC Genome Browser
ID ENSP00000274979.frag.267469
Chromosome 1
Start Coordinate 16424419
Stop Coordinate 16426300
Strand -
Parent Protein ENSP00000274979
Protein Sequence Start 464
Protein Sequence Stop 933
Parent Gene ENSG00000146205
Fraction 0.49
Number of Insertions 38
Number of Deletions 4
Number of Shifts 9
Number of Stops 7
Identity 0.38
PolyA --
Disablements? Yes
Exons [[16424419, 16424572], [16424699, 16424813], [16424889, 16424945], [16425028, 16425186], [16425322, 16425384], [16425541, 16426300]]
Introns [[16424573, 16424698], [16424814, 16424888], [16424946, 16425027], [16425187, 16425321], [16425385, 16425540]]
Pseudogene Class Ambiguous
Pseudogene Sequence GGGCTTAGGGGTCCTTCCCTCTCCTCCTGGGAGAGCAGCCCAGGAGAGTACCCCGGCATAGCGCCGCACCCTTCGCCGAGCTGAGCGCGCCTGGGAGCCGCTGTGCTACGCCGAGGAACTGAGCCTGCGCGCGCCGTCTCATGTGGAGGGGTGGGGCGGGGTCCGCCAGGGGCGGAGTCTCCCTAGGGGGCCGTAACCCT
Build 36

Overlapping Annotations
Human49/ENSP00000274979.frag.267491 (100%)
human53/ENSP00000274979.frag.306050 (100%)

Fragment Browser
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*(208-69)(5-144) Ev: 7.68624e-23 s: 140/140 r
* "h_16424360_16426359" (2000 bp) / "EX_12" (144 bp)
* score = 333 : bitscore = 97.25
* mutations per triplet 12, 10, 13 (1.91e-02) | ts : 13 tv : 22 | entropy : 4.65071

        |200      |190      |180      |170      |160      |150      |140        
GCTGCCTCTTTGACCACCCAGGAACCGTGTTCTTCAGCATCTTCATGTCCTTCTGGGGCCATGGCCTTCCTGGAGCACTG
||:|.||.||:||||||...||.|||||||||||||||.|.||||||.|.:|.||| |||:||.:.:|.||||||:||||
GCCGGCTGTTCGACCACGGCGGCACCGTGTTCTTCAGCTTGTTCATGGCACTGTGG-GCCGTGCTGCTGCTGGAGTACTG
     |10       |20       |30       |40       |50       |60        |70       |80 

         |120      |110      |100      |90       |80      
GAAGCAG-GGAGTGCCACCTTGGCCCACCACTGGGACTGCAGTGACTTCCAGGACCAGGAG
|||||:| :|||:|||||.:|||||:|||:||||||||||..|||||.|.|||||...|||
GAAGCGGAAGAGCGCCACGCTGGCCTACCGCTGGGACTGCTCTGACTACGAGGACACTGAG
      |90       |100      |110      |120      |130      |140
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*(810-670)(36-164) Ev: 2.19125e-18 s: 141/129 r
* "h_16424360_16426359" (2000 bp) / "EX_09" (166 bp)
* score = 281 : bitscore = 82.45
* mutations per triplet 13, 7, 13 (7.99e-03) | ts : 16 tv : 17 | entropy : 4.61421

|810      |800      |790      |780      |770      |760      |750      |740      
TTCAGATCTCAACTCTTGCCAATTGCTGTACCCATACTGGGCTTGCTGGGGATACTGGCACAAGTACCAGCCCCTGGACC
|:||.::||||||:..:|||||.|.||.|.||.::|||||||.:|||||||..|.|||.|||||||||||||||||||||
TCCACGCCTCAACCAGCGCCAAGTCCTTTTCCAGCACTGGGCGCGCTGGGGCAAGTGGAACAAGTACCAGCCCCTGGACC
    |40       |50       |60       |70       |80       |90       |100      |110  

|730      |720      |710      |700      |690      |680     
AGCCTTTGGACAAAGTATGAGAGTACTTTGGGGTGAAGGTGGTCATCCACTTTGCCTGGCT
|            .||::|.::||||||:||||.||||||||:|.||:||||:||||||||
A------------CGTGCGCAGGTACTTCGGGGAGAAGGTGGCCCTCTACTTCGCCTGGCT
                |120      |130      |140      |150      |160
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*(810-670)(36-164) Ev: 1.6807e-16 s: 141/129 r
* "h_16424360_16426359" (2000 bp) / "EX_09" (166 bp)
* score = 259 : bitscore = 76.19
* mutations per triplet 15, 7, 14 (4.31e-03) | ts : 18 tv : 18 | entropy : 4.52108

|810      |800      |790      |780      |770      |760      |750      |740      
TTCAGATCTCAACTCTTGCCAATTGCTGTACCCATACTGGGCTTGCTGGGGATACTGGCACAAGTACCAGCCCCTGGACC
|:||.::||||||:..:|||||.|.||.|.||.::|||||||.:|||||||..|.|||.||||||            |||
TCCACGCCTCAACCAGCGCCAAGTCCTTTTCCAGCACTGGGCGCGCTGGGGCAAGTGGAACAAGT------------ACC
    |40       |50       |60       |70       |80       |90       |100            

|730      |720      |710      |700      |690      |680     
AGCCTTTGGACAAAGTATGAGAGTACTTTGGGGTGAAGGTGGTCATCCACTTTGCCTGGCT
||||::|||||.|.||::|.::||||||:||||.||||||||:|.||:||||:||||||||
AGCCCCTGGACCACGTGCGCAGGTACTTCGGGGAGAAGGTGGCCCTCTACTTCGCCTGGCT
      |110      |120      |130      |140      |150      |160
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*(1067-964)(7-110) Ev: 1.78093e-09 s: 104/104 r
* "h_16424360_16426359" (2000 bp) / "EX_08" (111 bp)
* score = 177 : bitscore = 52.85
* mutations per triplet 7, 9, 11 (1.96e-02) | ts : 7 tv : 20 | entropy : 4.21953

       |1060         |1050     |1040     |1030     |1020     |1010     |1000    
GAAATCCTGGACCGCAC----AATCTCCAGGAAGAAGAAACATACAGAGATGGGCATCGCCCACCTGCTGGTAGAGGGAG
||:|||||||.|.:.||    .||..|||.| ||||||||.|:.:   |.|.||.|||..|||.|||||||:||||||.|
GAGATCCTGGCCAAGACCCCGTATGGCCACG-AGAAGAAAAACCT---GCTTGGGATCCACCAGCTGCTGGCAGAGGGTG
   |10       |20       |30        |40       |50          |60       |70       |80

 |990      |980      |970   
TCTACACTGCGGCCTTCCCACTGCGTGA
||:.||.|||.||||||||.||||:|||
TCCTCAGTGCCGCCTTCCCCCTGCATGA
       |90       |100
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*(1887-1815)(17-93) Ev: 0.00319705 s: 73/77 r
* "h_16424360_16426359" (2000 bp) / "EX_05" (108 bp)
* score = 104 : bitscore = 32.08
* mutations per triplet 8, 5, 9 (2.04e-02) | ts : 6 tv : 16 | entropy : 3.64644

       |1880     |1870     |1860      |1850     |1840        |1830     |1820 
GGCATAGCGCCGCACCCTTCGCCGAGCTGAGCG-CGCCTGGGAGCCGCTGTG---CTACGCCGAGGAACTGAGCCTG
||.|:|.|:|.|::|.||.||||...||.|||| |.||||||...:|||.||   |||||||||:||.|||.|||||
GGAACACCACAGTGCACTACGCCCTCCTCAGCGCCTCCTGGGCTGTGCTCTGCTACTACGCCGAAGACCTGCGCCTG
   |20       |30       |40       |50       |60       |70       |80       |90
Alignments by YASS

Associated Sets
Human Pseudogenes