Yale Pseudogenes (Ensembl 50) :: ENSP00000279067.dup.267425

ENSP00000279067.dup.267425
ViewUCSC Genome Browser
ID ENSP00000279067.dup.267425
Chromosome 1
Start Coordinate 645249
Stop Coordinate 649807
Strand -
Parent Protein ENSP00000279067
Protein Sequence Start 134
Protein Sequence Stop 149
Parent Gene ENSG00000149656
Fraction 0.9
Number of Insertions --
Number of Deletions --
Number of Shifts --
Number of Stops 1
Identity 0.93
PolyA 3
Disablements? Yes
Exons [[645249, 645452], [649595, 649807]]
Introns [[645453, 649594]]
Pseudogene Class Duplicated
Pseudogene Sequence TTTCACCTGCAGTTGAAGATCCGTGAGGTGCCCAGAAGATCATGCAGTCATCAGTCCCACGGAGCAGCCTGCGAGGCTGAGGCTCCTCCCACTGGACCGCCCCCCAACTGGCACCACTGCTGCCCCTGCCCCTACTCTCAGCCTCACGTGACTCTCGGGCAGAAGCAGTGGTGGGGCAGCCAGGGCAGCGTCAAGAGTCT
Build 36

Overlapping Annotations
Havana/OTTHUMG00000057431 (61%)
Human49/ENSP00000279067.dup.267428 (100%)
Human49/ENSP00000375355.proc.267429 (11%)
Human49/ENSP00000160740.proc.268407 (95%)
Human50/ENSP00000160740.proc.268093 (95%)
human53/ENSP00000279067.dup.306008 (100%)
human53/ENSP00000160740.proc.306683 (95%)
Torrents/90 (35%)
Torrents/91 (39%)
Yontao/NM_207366_chr7___4_1 (56%)
Yontao/NM_015125_chr19___2_1 (82%)

Fragment Browser
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*(4589-4383)(1-207) Ev: 3.08284e-81 s: 207/207 r
* "h_645219_649837" (4619 bp) / "EX_01" (207 bp)
* score = 979 : bitscore = 289.63
* mutations per triplet 1, 1, 0 (2.22e-01) | ts : 2 tv : 0 | entropy : 5.37472

         |4580     |4570     |4560     |4550     |4540     |4530     |4520      
TTTCACCTGCAGTTGAAGATCCGTGAGGTGCCCAGAAGATCATGCAGTCATCAGTCCCACGGAGCAGCCTGCGAGGCTGA
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||:||||||||||
TTTCACCTGCAGTTGAAGATCCGTGAGGTGCCCAGAAGATCATGCAGTCATCAGTCCCACGGAGCAGCCCGCGAGGCTGA
         |10       |20       |30       |40       |50       |60       |70        

         |4500     |4490     |4480     |4470     |4460     |4450     |4440      
GGCTCCTCCCACTGGACCGCCCCCCAACTGGCACCACTGCTGCCCCTGCCCCTACTCTCAGCCTCACGTGACTCTCGGGC
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GGCTCCTCCCACTGGACCGCCCCCCAACTGGCACCACTGCTGCCCCTGCCCCTACTCTCAGCCTCACGTGACTCTCGGGC
         |90       |100      |110      |120      |130      |140      |150       

         |4420     |4410     |4400     |4390   
AGAAGCAGTGGTGGGGCAGCCAGGGCAGCGTCAAGAGTCTGAGCCAG
|||:|||||||||||||||||||||||||||||||||||||||||||
AGAGGCAGTGGTGGGGCAGCCAGGGCAGCGTCAAGAGTCTGAGCCAG
         |170      |180      |190      |200
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*(225-57)(1-169) Ev: 1.01035e-61 s: 169/169 r
* "h_645219_649837" (4619 bp) / "EX_02" (169 bp)
* score = 758 : bitscore = 224.80
* mutations per triplet 0, 2, 0 (1.11e-01) | ts : 2 tv : 0 | entropy : 5.13721

     |220      |210      |200      |190      |180      |170      |160      |150 
CTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGA
|||||||||||:||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CTGCAGGACAAATTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGA
         |10       |20       |30       |40       |50       |60       |70        

     |140      |130      |120      |110      |100      |90       |80       |70  
AGGAGAAATCATAGATTTTTATAAAATGAAAGCTGCCTCTGAAGCACTGCAGACTCAGCTGAGCACCGATACAAAGAAAG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||:|||||||||||||
AGGAGAAATCATAGATTTTTATAAAATGAAAGCTGCCTCTGAAGCACTGCAGACTCAGCTGAGCACTGATACAAAGAAAG
         |90       |100      |110      |120      |130      |140      |150       

     |60 
ACAAACATC
|||||||||
ACAAACATC
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*(4412-4353)(1-60) Ev: 3.94798e-20 s: 60/60 r
* "h_645219_649837" (4619 bp) / "EI_01" (60 bp)
* score = 287 : bitscore = 86.64
* mutations per triplet 0, 0, 0 (1.00e+00) | ts : 0 tv : 0 | entropy : 4.72438

  |4410     |4400     |4390     |4380     |4370     |4360   
AGCCAGGGCAGCGTCAAGAGTCTGAGCCAGGTGAGGTGCGGTCAGGACCCCCACAGGGCT
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AGCCAGGGCAGCGTCAAGAGTCTGAGCCAGGTGAGGTGCGGTCAGGACCCCCACAGGGCT
         |10       |20       |30       |40       |50
Top

*(255-196)(1-60) Ev: 4.5294e-19 s: 60/60 r
* "h_645219_649837" (4619 bp) / "IE_02" (60 bp)
* score = 275 : bitscore = 83.12
* mutations per triplet 0, 1, 0 (3.33e-01) | ts : 1 tv : 0 | entropy : 5.06031

     |250      |240      |230      |220      |210      |200 
TGGTGTCACAACTGCACATTGGTTTCACAGCTGCAGGACAAGTTCGAGCATCTTAAAATG
|||||||||||||||||||||||||||||||||||||||||:||||||||||||||||||
TGGTGTCACAACTGCACATTGGTTTCACAGCTGCAGGACAAATTCGAGCATCTTAAAATG
         |10       |20       |30       |40       |50
Top

*(258-196)(17-60) Ev: 0.022171 s: 63/44 r
* "h_645219_649837" (4619 bp) / "IE_02" (60 bp)
* score = 86 : bitscore = 27.68
* mutations per triplet 3, 1, 0 (4.94e-02) | ts : 2 tv : 2 | entropy : 4.65108

        |250      |240      |230      |220      |210      |200 
CTTTGGTGTCACAACTGCACATTGGTTTCACAGCTGCAGGACAAGTTCGAGCATCTTAAAATG
|.|||||.|||||:|||||                   ||||||:||||||||||||||||||
CATTGGTTTCACAGCTGCA-------------------GGACAAATTCGAGCATCTTAAAATG
   |20       |30                          |40       |50
Top

*(86-27)(1-60) Ev: 1.8801e-18 s: 60/60 r
* "h_645219_649837" (4619 bp) / "EI_02" (60 bp)
* score = 268 : bitscore = 81.07
* mutations per triplet 0, 1, 0 (3.33e-01) | ts : 1 tv : 0 | entropy : 4.98546

      |80       |70       |60       |50       |40       |30 
TGAGCACCGATACAAAGAAAGACAAACATCGTAAGAAGCAATAGTTTCTCTTACTATTCT
|||||||:||||||||||||||||||||||||||||||||||||||||||||||||||||
TGAGCACTGATACAAAGAAAGACAAACATCGTAAGAAGCAATAGTTTCTCTTACTATTCT
         |10       |20       |30       |40       |50
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*(86-31)(1-56) Ev: 4.94575e-08 s: 56/56 r
* "h_645219_649837" (4619 bp) / "EE_02" (60 bp)
* score = 150 : bitscore = 46.45
* mutations per triplet 2, 6, 5 (2.26e-02) | ts : 7 tv : 6 | entropy : 4.32316

      |80       |70       |60       |50       |40       
TGAGCACCGATACAAAGAAAGACAAACATCGTAAGAAGCAATAGTTTCTCTTACTA
|||||||:||||||||||||||||||||||.|:|...::|..|:||:||||||:||
TGAGCACTGATACAAAGAAAGACAAACATCCTGATCCATATGAATTCCTCTTATTA
         |10       |20       |30       |40       |50
Alignments by YASS

Associated Sets
Human Pseudogenes