| ENSP00000341730.frag.267453 | |
|---|---|
| View | UCSC Genome Browser |
| ID | ENSP00000341730.frag.267453 |
| Chromosome | 1 |
| Start Coordinate | 12203439 |
| Stop Coordinate | 12203753 |
| Strand | - |
| Parent Protein | ENSP00000341730 |
| Protein Sequence Start | 214 |
| Protein Sequence Stop | 214 |
| Parent Gene | ENSG00000147403 |
| Fraction | 0.5 |
| Number of Insertions | -- |
| Number of Deletions | 3 |
| Number of Shifts | -- |
| Number of Stops | -- |
| Identity | 0.787 |
| PolyA | -- |
| Disablements? | No |
| Exons | [[12203439, 12203753]] |
| Introns | [] |
| Pseudogene Class | Ambiguous |
| Pseudogene Sequence | AGGCTTCAGACAGGCATGCAAGTTGCCTTTGGAAAGCCCCAGGGCACCGTGGCCAGGGTTCACATTGGCCAAGTCATCATGTTCATCCACACCAAGCTGCAGAACAAGGAGCATGTGATTGGGGCCCTACATAGGGTCACGTTTAAGTTCCCTGGCCACCAGAAGGTCCACATCTCAAAGAAGTGGGGCTTTACCAAGTT |
| Build | 36 |
Fragment Browser
Top
*(1155-993)(1-163) Ev: 8.18791e-49 s: 163/163 r
* "h_12202597_12204595" (1999 bp) / "EX_05" (163 bp)
* score = 677 : bitscore = 181.41
* mutations per triplet 9, 8, 0 (1.88e-04) | ts : 15 tv : 2 | entropy : 5.17393
|1150 |1140 |1130 |1120 |1110 |1100 |1090 |1080
GCTTCAGACAGGCATGCAAGTTGCCTTTGGAAAGCCCCAGGGCACCGTGGCCAGGGTTCACATTGGCCAAGTCATCATGT
|||:||:||||||||||:||.||||||||||||||||||||||||:||||||||||||||||||||||||||:|||||||
GCTCCAAACAGGCATGCGAGGTGCCTTTGGAAAGCCCCAGGGCACTGTGGCCAGGGTTCACATTGGCCAAGTTATCATGT
|10 |20 |30 |40 |50 |60 |70
|1070 |1060 |1050 |1040 |1030 |1020 |1010 |1000
TCATCCACACCAAGCTGCAGAACAAGGAGCATGTGATTGGGGCCCTACATAGGGTCACGTTTAAGTTCCCTGGCCACCAG
:|||||:||||||||||||||||||||||||||||||||:||||||:|::||||:||.|||:|||||:|||||||:||||
CCATCCGCACCAAGCTGCAGAACAAGGAGCATGTGATTGAGGCCCTGCGCAGGGCCAAGTTCAAGTTTCCTGGCCGCCAG
|90 |100 |110 |120 |130 |140 |150
AAG
|||
AAG
Top
*(991-840)(2-153) Ev: 3.26284e-42 s: 152/152 r
* "h_12202597_12204595" (1999 bp) / "EX_06" (153 bp)
* score = 594 : bitscore = 159.48
* mutations per triplet 6, 10, 4 (1.11e-02) | ts : 15 tv : 5 | entropy : 5.07896
|990 |980 |970 |960 |950 |940 |930 |920
TCCACATCTCAAAGAAGTGGGGCTTTACCAAGTTCAATGCAGATGAATTTGAATATGTGGTGGCTGAGAAACAGCTCAGC
|||||||||||||||||||||||||:||||||||||||||.||||||||||||.|::||||||||||:||:|:|||||.|
TCCACATCTCAAAGAAGTGGGGCTTCACCAAGTTCAATGCTGATGAATTTGAAGACATGGTGGCTGAAAAGCGGCTCATC
|10 |20 |30 |40 |50 |60 |70
|910 |900 |890 |880 |870 |860 |850
CCAGATGGCTGTGGGGTCAAATCCATCCCTAGTCATGGCCCCCTGGAGAAGTGGCAAGCCTTGTACTCATGA
||||||||||||||||||||:|.||||||:|:||:||||||:|||||.|||||||::|||:||:||||||||
CCAGATGGCTGTGGGGTCAAGTACATCCCCAATCGTGGCCCTCTGGACAAGTGGCGGGCCCTGCACTCATGA
|90 |100 |110 |120 |130 |140 |150
Top
*(1022-963)(1-60) Ev: 2.66825e-14 s: 60/60 r
* "h_12202597_12204595" (1999 bp) / "EE_05" (60 bp)
* score = 243 : bitscore = 66.76
* mutations per triplet 3, 3, 1 (6.40e-02) | ts : 6 tv : 1 | entropy : 4.61635
|1020 |1010 |1000 |990 |980 |970
GTCACGTTTAAGTTCCCTGGCCACCAGAAGGTCCACATCTCAAAGAAGTGGGGCTTTACC
|:||.|||:|||||:|||||||:|||||||:|||||||||||||||||||||||||:|||
GCCAAGTTCAAGTTTCCTGGCCGCCAGAAGATCCACATCTCAAAGAAGTGGGGCTTCACC
|10 |20 |30 |40 |50
Top
*(1187-1126)(1-60) Ev: 1.75121e-10 s: 62/60 r
* "h_12202597_12204595" (1999 bp) / "IE_05" (60 bp)
* score = 195 : bitscore = 54.08
* mutations per triplet 3, 5, 1 (2.56e-02) | ts : 8 tv : 1 | entropy : 4.43807
|1180 |1170 |1160 |1150 |1140 |1130
TGTCTTTGACCTTGGCATTGTCCCCAGTGTAGGCTTCAGACAGGCATGCAAGTTGCCTTTGG
|||:|:||||||| |||:|: |||||:||||||||:||:||||||||||:||.|||||||||
TGTTTCTGACCTT-GCACTA-CCCCAATGTAGGCTCCAAACAGGCATGCGAGGTGCCTTTGG
|10 |20 |30 |40 |50
Alignments by YASS| Associated Sets |
|---|
| Human Pseudogenes |