| ENSP00000347969.frag.267452 | |
|---|---|
| View | UCSC Genome Browser |
| ID | ENSP00000347969.frag.267452 |
| Chromosome | 1 |
| Start Coordinate | 12062895 |
| Stop Coordinate | 12063191 |
| Strand | - |
| Parent Protein | ENSP00000347969 |
| Protein Sequence Start | 156 |
| Protein Sequence Stop | 156 |
| Parent Gene | ENSG00000198242 |
| Fraction | 0.64 |
| Number of Insertions | -- |
| Number of Deletions | 1 |
| Number of Shifts | -- |
| Number of Stops | -- |
| Identity | 0.86 |
| PolyA | 3 |
| Disablements? | No |
| Exons | [[12062895, 12063191]] |
| Introns | [] |
| Pseudogene Class | Ambiguous |
| Pseudogene Sequence | AAGCCCAAATATCCTCGAAAGAGCGTTCCCAGGAGAAACAAGCTCGACCACTCTGCTATCAAGTTCCCACTGACCACAGAGTCTGCCATGAAGAAGATAGAAGACAACAACACACTTGTATTCACTGTGGATGTTAAAGCCAACAAGTACCAGAGCAAACAGGCTGTGACAAAGCTCTATGGCATGGATGTGGCCAAGGT |
| Build | 36 |
Fragment Browser
Top
*(1107-934)(1-177) Ev: 6.68476e-52 s: 174/177 r
* "h_12062044_12064042" (1999 bp) / "EX_03" (177 bp)
* score = 712 : bitscore = 191.32
* mutations per triplet 6, 9, 1 (1.86e-03) | ts : 10 tv : 6 | entropy : 5.35122
|1100 |1090 |1080 |1070 |1060 |1050 |1040
GCTCGACCACTCTGCTATCA---AGTTCCCACTGACCACAGAGTCTGCCATGAAGAAGATAGAAGACAACAACACACTTG
|||:|||||||.|||||||| ||||:||:||||||||.||||||||||||||||||||||||||||||||||||||||
GCTTGACCACTATGCTATCATCAAGTTTCCGCTGACCACTGAGTCTGCCATGAAGAAGATAGAAGACAACAACACACTTG
|10 |20 |30 |40 |50 |60 |70
|1030 |1020 |1010 |1000 |990 |980 |970 |960
TATTCACTGTGGATGTTAAAGCCAACAAGTACCAGAGCAAACAGGCTGTGACAAAGCTCTATGGCATGGATGTGGCCAAG
|:||||:||||||||||||||||||||||:||||||.:|||||||||||||.:|||||.||||:|||.||||||||||||
TGTTCATTGTGGATGTTAAAGCCAACAAGCACCAGATTAAACAGGCTGTGAAGAAGCTGTATGACATTGATGTGGCCAAG
|90 |100 |110 |120 |130 |140 |150
|950 |940
GTCAGCACCCTGATTCG
||||:||||||||||||
GTCAACACCCTGATTCG
|170
Top
*(933-864)(1-70) Ev: 6.16664e-21 s: 70/70 r
* "h_12062044_12064042" (1999 bp) / "EX_04" (70 bp)
* score = 324 : bitscore = 88.45
* mutations per triplet 1, 1, 1 (2.22e-01) | ts : 1 tv : 2 | entropy : 5.0646
|930 |920 |910 |900 |890 |880 |870
GCCGGATGGAGAGAAGAAGGCATATGTTCCACTGGCTCCTGATTACAATGCTTTGGATGTTGCCAACAAA
|||.|||||||||||||||||||||||||.||||||||||||||||:|||||||||||||||||||||||
GCCTGATGGAGAGAAGAAGGCATATGTTCGACTGGCTCCTGATTACGATGCTTTGGATGTTGCCAACAAA
|10 |20 |30 |40 |50 |60
Top
*(962-905)(2-59) Ev: 7.24745e-17 s: 58/58 r
* "h_12062044_12064042" (1999 bp) / "EE_03" (60 bp)
* score = 273 : bitscore = 74.93
* mutations per triplet 1, 1, 0 (2.22e-01) | ts : 1 tv : 1 | entropy : 4.88837
|960 |950 |940 |930 |920 |910
GATGTGGCCAAGGTCAGCACCCTGATTCGGCCGGATGGAGAGAAGAAGGCATATGTTC
||||||||||||||||:|||||||||||||||.|||||||||||||||||||||||||
GATGTGGCCAAGGTCAACACCCTGATTCGGCCTGATGGAGAGAAGAAGGCATATGTTC
|10 |20 |30 |40 |50
Top
*(1137-1081)(1-60) Ev: 1.23009e-12 s: 57/60 r
* "h_12062044_12064042" (1999 bp) / "EE_02" (60 bp)
* score = 220 : bitscore = 60.88
* mutations per triplet 2, 3, 0 (4.12e-02) | ts : 4 tv : 1 | entropy : 4.87951
|1130 |1120 |1110 |1100 |1090
TCCTCGAAAGAGCGTTCCCAGGAGAAACAAGCTCGACCACTCTGCTATCA---AGTTCCC
||||||:|||||||:||||||||||||||||||:|||||||.|||||||| ||||:||
TCCTCGGAAGAGCGCTCCCAGGAGAAACAAGCTTGACCACTATGCTATCATCAAGTTTCC
|10 |20 |30 |40 |50
Top
*(893-834)(1-60) Ev: 9.28556e-12 s: 60/60 r
* "h_12062044_12064042" (1999 bp) / "EE_04" (60 bp)
* score = 209 : bitscore = 57.97
* mutations per triplet 4, 2, 5 (3.91e-02) | ts : 8 tv : 3 | entropy : 4.5934
|890 |880 |870 |860 |850 |840
GATTACAATGCTTTGGATGTTGCCAACAAAACTGGGATCATCTTGGCTGGGCACGGTGGC
||||||:||||||||||||||||||||||||:|||||||||||.::|||:|:.|:|:.||
GATTACGATGCTTTGGATGTTGCCAACAAAATTGGGATCATCTAAACTGAGTCCAGCTGC
|10 |20 |30 |40 |50
Alignments by YASS| Associated Sets |
|---|
| Human Pseudogenes |